PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037347m
Common NameCISIN_1g037347mg, LOC102621525
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 296aa    MW: 32762.3 Da    PI: 4.7657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037347mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20137187255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrd      k +r++lg+f+taeeAa a+++a+++++g
  orange1.1g037347m 137 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAALAYDKAALRIRG 187
                        7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-32136196IPR001471AP2/ERF domain
CDDcd000185.09E-31137195No hitNo description
PROSITE profilePS5103223.973137195IPR001471AP2/ERF domain
PfamPF008474.4E-15137187IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-23137196IPR016177DNA-binding domain
SMARTSM003801.1E-38137201IPR001471AP2/ERF domain
PRINTSPR003672.8E-11138149IPR001471AP2/ERF domain
PRINTSPR003672.8E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATQKNDHDA VPESILENVW ANFIGSSEDG RIQRSGTSDA SEFSKSSSWE EMPSLDGSVE  60
ILERLPSLGR WISMGAEAWE ELLDGIIPTT KESYKCNTTG DDSKICRINS NTASSAEPGP  120
NKMNAMRVEK VATPTRHYRG VRRRPWGKYA AEIRDSSRKG ARVWLGTFDT AEEAALAYDK  180
AALRIRGPKA HLNFPLEEVA NNAMATEFSG AGFNDLSMMT ISQENDNISS SRNRKRASRE  240
WEYQNIGATN YTMIDEPATP IKRTASMESA FGHELDVLEF QDLGSEYLDS LLSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27136197465ATERF1
3gcc_A1e-27136197465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4880262e-38AM488026.2 Vitis vinifera contig VV78X209729.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468209.10.0ethylene-responsive transcription factor 15
TrEMBLA0A067GGI30.0A0A067GGI3_CITSI; Uncharacterized protein
STRINGXP_006468209.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-33ERF family protein