PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037309m
Common NameCISIN_1g037309mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 287aa    MW: 32950.1 Da    PI: 9.5332
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037309mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1095.5e-3411235127
                NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                        +rF Pt +elv++yL++k+ +++l+  + i+e++iyk+ P +L +k+++e +  +yfF++rd+ky++g+r++r +  +g+Wka+gk +ev +
  orange1.1g037309m   1 YRFVPTCKELVTYYLRNKILERPLPP-SKIREANIYKHSPTELSEKYDKEGSgVMYFFTPRDRKYPEGERPKRsVDGNGFWKASGKAEEVEN 91 
                        69*********************999.67**************977777666366******************6677*************99 PP

                NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyr 127
                          + l+  k++Lv+y+g+ +k++ktdW+m+e+ 
  orange1.1g037309m  92 -FDILIAKKRSLVYYQGSYKKPKKTDWLMQEFF 123
                        .999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-401152IPR003441NAC domain
PfamPF023658.7E-171122IPR003441NAC domain
PROSITE profilePS5100540.8241153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
YRFVPTCKEL VTYYLRNKIL ERPLPPSKIR EANIYKHSPT ELSEKYDKEG SGVMYFFTPR  60
DRKYPEGERP KRSVDGNGFW KASGKAEEVE NFDILIAKKR SLVYYQGSYK KPKKTDWLMQ  120
EFFMTGSSSS SARKGRPHNM KLDDWVLCKV YKNKKRDKEE DGGHPVAFPN SSTVVGESSE  180
LPMMQKLNSN VPAQSLNLLH RSQAMHAISS QMSTYNNGQN GFQMPAAMLH SHEVQATSSQ  240
MPMYYNGQNF LLLNGGHEDT LWQQNNSHHH VDSKTNNQPE GIDMINN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-30116019174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421412.20.0NAC domain-containing protein 67
TrEMBLA0A067EIJ90.0A0A067EIJ9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006421412.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-38NAC-like, activated by AP3/PI