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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g037247m |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
YABBY |
| Protein Properties |
Length: 197aa MW: 22726.6 Da PI: 10.0362 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g037247m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 109.2 | 7.5e-34 | 22 | 115 | 80 | 168 |
YABBY 80 enlksnvekeesa.stsvssekl..senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
e++++ +++ +++ ++ s + l s+ne+e++ v + v++PPekrqr+Psaynrfikeei+r+k++nP+++h+eafs+aaknWa P+i
orange1.1g037247m 22 EEFRKEEVQADQKaFNKFSPSILtsSDNEEEDTGSVINhvVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPI 113
33333333332220222222222445555555555444459*************************************************99 PP
YABBY 167 hf 168
+
orange1.1g037247m 114 QH 115
65 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 197 aa
Download sequence Send
to blast |
MPLYLLYTPF QKFPHSSKMP KEEFRKEEVQ ADQKAFNKFS PSILTSSDNE EEDTGSVINH 60
VVNKPPEKRQ RAPSAYNRFI KEEIRRLKTE NPNMAHKEAF STAAKNWAQC PPIQHKGDGE 120
SCGGQEEEKR AWNFEATDRV HVQGNGFRER KAPRHSFRAR KMLLEMRFEH FTSSSSRRVS 180
TDKKEAPAFR ELLVSG*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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