PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037198m
Common NameCISIN_1g037198mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 309aa    MW: 35576.2 Da    PI: 6.5115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037198mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.72.4e-19121464128
                NAM   4 GfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykv.eP...wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                         +rF Pt++el+ +yL +k+++++      +++ +k++d+y+  eP   wdL    ++    + +yfF++ +k++++g+r n ++    W+ 
  orange1.1g037198m  12 VLRFYPTEQELLEFYLLHKITQNHnlyQASDDIpVKDCDLYSPhEPnliWDLYGgdQL-MAGQALYFFTQLKKASPKGSRFNIKIGFDAWQG 102
                        58*******************9998863334556999***996256333344313322.345688******************999999*** PP

                NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + k vl+   +++  g kk + +   r++  ++ +W+mhe+++
  orange1.1g037198m 103 EDRAKLVLAVgsEDQILGFKKRFRYE-SRENLEQNGRWIMHEFTI 146
                        9999999998667777********97.6777779*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-207153IPR003441NAC domain
PROSITE profilePS5100521.6499170IPR003441NAC domain
PfamPF023655.4E-1411145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSPHVGLRFY PVLRFYPTEQ ELLEFYLLHK ITQNHNLYQA SDDIPVKDCD LYSPHEPNLI  60
WDLYGGDQLM AGQALYFFTQ LKKASPKGSR FNIKIGFDAW QGEDRAKLVL AVGSEDQILG  120
FKKRFRYESR ENLEQNGRWI MHEFTINAAL FGDQYSHKAR NFVLYCVKKN ELENPSEKAN  180
LGGKRSSGSK RKLKEVVTSS SHIDHDDEGF QSKRLKAHQN SVLIEQSHSP CSSSSLHTVE  240
HQGEIDNILE IVESEVGIDS LPNKLVFNIL VFYFKKNSRG EETEVYLREE SIVNEALIHH  300
YCEIFLML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024949318.10.0NAC domain-containing protein 96-like
TrEMBLA0A067DRR10.0A0A067DRR1_CITSI; Uncharacterized protein
STRINGXP_006492969.11e-139(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1918526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-12NAC-domain protein 101