PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

orange1.1g037136m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 171aa MW: 19268.1 Da PI: 9.8687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037136m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.4e-10	92	142	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +E++RRd+++s ++L +l+P+ +ka++ s + L +A YIk+L+ orange1.1g037136m 92 KTIEKNRRDHMKSLCFKLSSLIPShHFKASKDMISQQDQLDLASCYIKQLR 142 689*******************999999999**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.1E-9	85	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-8	85	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.597	86	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-7	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.52E-6	94	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVSGLLAVAC CLLPSAFGLL VLDDSAILLS ESADMNCKHR QSCWTPPGNG SPVKSKHQQQ 60 MYNSLSFWRE EVHREWRRMK KRSDQSSKPD RKTIEKNRRD HMKSLCFKLS SLIPSHHFKA 120 SKDMISQQDQ LDLASCYIKQ LRERPMAGEP AIMGGSRSNG CWSKEGKSAQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	82	RRMKKRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.10397	1e-136	fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493102.1	4e-43	transcription factor bHLH162-like
STRING	XP_006493102.1	1e-42	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-10	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g037136m