PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037037m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family BES1
Protein Properties Length: 702aa    MW: 78731.6 Da    PI: 5.6175
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037037mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822149.23.3e-46782172134
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssas 87 
                        g +r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+     +++ +  ss+ 
  orange1.1g037037m  78 GVRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRTAggaSSMVTSSSSHM 169
                        7799****************************************************************966666666676666667777777 PP

             DUF822  88 aspesslq.sslkssalaspvesysaspksssfpspssldsislasaa 134
                        +s++++++ ++ +ss  +s ve   +++k + +p ps +d  ++a+++
  orange1.1g037037m 170 VSQQTPSTsLRGVSSGYRSSVEYNTCQMKGVFMPTPSPYDLSPIAQSQ 217
                        888888887999****************************99998653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-3980217IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.32E-177258697IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-192261695IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.0E-99267685IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66298312IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66319337IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66341362IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060345353IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007509.4E-66434456IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66507526IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66541557IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66558569IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66576599IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.4E-66616638IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MATDMQRLIG TSEEDDEEEM DMDVKEEDDD EEENGEKHGR RQVMVGVDVC TAPSSSNNNQ  60
FQHQQEIQEQ AGTPGGGGVR RSRPLEEKER TKLRERHRRA ITARILAGLR RHGNYNLRVR  120
ADINDVIAAL AREAGWVVLP DGTTFPSRSQ GSRTAGGASS MVTSSSSHMV SQQTPSTSLR  180
GVSSGYRSSV EYNTCQMKGV FMPTPSPYDL SPIAQSQPSL VEDGREQTEI QSHIGGPVDA  240
VSDKQIADVP PKLPERDFSG TPYVPVYVML PLGVINLKCE LIDPDGLLKQ LRVLKSINVD  300
GVMVDCWWGI VEAHTPQDYN WNGYKKLFQM VSELKLKLQV VMSFHECGGN VGDDVCIPLP  360
HWVAEIGRIN PHIFFTDREG RRNPECLSWG IDKERVLRGR TALEVYFDYM RSFRVEFDEF  420
FQNGVISMVV VGLGPCGELR YPSCPVKHGW RYPGIGEFQC YDQYLLKNLR KASEARGHSF  480
WARGPDNAGS YNSRPHETGF FCDGGDYNGY YGRFFLNWYS QVLVDHGDRV LSLAKLAFEG  540
TCIGAKLSGF HWWYKTASHA AELTAGFYNP CNRDGYAAIV ATLKKNGAVL NFASAELHTL  600
ERQEEFSEAL ADPDGLMWQV MNAAWDVCTP VASENTLPCH DRVGYNKILD NAKPLSDPDG  660
RHFLSFSYLR LGLGLMEREN FMEFERFVKR MHGEAVLDLQ V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-14526369411444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1396970.0JX139697.1 Citrus trifoliata beta-amylase 6 (BAM6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445048.20.0LOW QUALITY PROTEIN: beta-amylase 7
RefseqXP_006491094.10.0beta-amylase 7 isoform X2
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLJ7I6380.0J7I638_PONTR; Beta-amylase
STRINGXP_006491093.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]