PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037016m
Common NameCISIN_1g037016mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 71aa    MW: 7745.19 Da    PI: 11.0128
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037016mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-261059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       +i+n++ rqvtfskRr+g++KKA+ELS+LCdaev + ifsst klye+++
  orange1.1g037016m 10 KINNSTSRQVTFSKRRKGLIKKAKELSILCDAEVGLAIFSSTAKLYEFAN 59
                       79**********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.394161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-27161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-34160IPR002100Transcription factor, MADS-box
CDDcd002651.63E-33260No hitNo description
PRINTSPR004047.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGRGKIVIQK INNSTSRQVT FSKRRKGLIK KAKELSILCD AEVGLAIFSS TAKLYEFANT  60
RLLCSLTTVP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18162162MEF2C
5f28_B1e-18162162MEF2C
5f28_C1e-18162162MEF2C
5f28_D1e-18162162MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedling roots and shoots (PubMed:14701936). Highly expressed in young leaves (PubMed:23463009). {ECO:0000269|PubMed:14701936, ECO:0000269|PubMed:23463009}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466574.15e-32MADS-box transcription factor 23-like
RefseqXP_024036204.14e-32MADS-box transcription factor 23
SwissprotQ6Z6W22e-29MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A067GTF21e-42A0A067GTF2_CITSI; Uncharacterized protein
STRINGXP_006466573.13e-34(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.16e-31AGAMOUS-like 17
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]