PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 181aa MW: 20043.1 Da PI: 8.3117

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036565m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.6e-40	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+l+rkC + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l++ orange1.1g036565m 20 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQ 111 6***************************************************************************************** PP DUF260 93 elallkee 100 +la+++++ orange1.1g036565m 112 DLAVARAR 119 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.614	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-40	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MKKWMCYKAM RGHEPRSSSS CAACKLLKRK CIPTCIFAPY FRSDEPKKFA KVHKVFGASN 60 VSKILTEVPE EQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMIELQ QDLAVARARL 120 ARYTTPAASS CAVLNDLCVG GSPAFSDLAA CGDFFDSFSQ NSLELNRVGD MYDFSQVPYM 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	15	123	6	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	15	123	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.490	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435777.1	1e-133	LOB domain-containing protein 21
Refseq	XP_006486289.1	1e-133	LOB domain-containing protein 21
Swissprot	Q9SRL8	7e-67	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A067FNC5	1e-131	A0A067FNC5_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NJW6	1e-131	A0A2H5NJW6_CITUN; Uncharacterized protein
TrEMBL	V4T709	1e-131	V4T709_9ROSI; Uncharacterized protein
STRING	XP_006486289.1	1e-132	(Citrus sinensis)
STRING	XP_006435777.1	1e-132	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-69	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	orange1.1g036565m

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]