PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036452m
Common NameCISIN_1g036452mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28091.9 Da    PI: 10.0579
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036452mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-312878151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fss+g+lyeys+
  orange1.1g036452m 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN 78
                       79***********************************************95 PP
2K-box1126.1e-37961924100
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        s++ s +ea+a+ +qqe+akL+ +i+n+q+++R++lGe+L+ L++keL+++e++Lek++++iRskKnell+++ie++qk+e +l++ n+ Lr
  orange1.1g036452m  96 SNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLR 187
                        4444599************************************************************************************* PP

              K-box  96 kklee 100
                        +k++e
  orange1.1g036452m 188 AKIAE 192
                        **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.9222080IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-422079IPR002100Transcription factor, MADS-box
CDDcd002652.87E-442194No hitNo description
SuperFamilySSF554552.49E-332192IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-322242IPR002100Transcription factor, MADS-box
PfamPF003195.5E-262976IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-324257IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-325778IPR002100Transcription factor, MADS-box
PfamPF014861.2E-26105190IPR002487Transcription factor, K-box
PROSITE profilePS5129715.081106196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAFPNELAAG REELSPKRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVSLIVFSSR GRLYEYSNNS VKSTIDRYKK ATADTSNTGS ICEANAQFYQ QEAAKLRIQI  120
SNMQNSNRNM LGESLSGLNF KELKNMETRL EKGISRIRSK KNELLFAEIE YMQKREVDLH  180
NSNQLLRAKI AENERGQQNM NLMQGGSSYE IIQSQPFDSR SYFQVNALQP TNHYPRQDQM  240
ALQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-202088169Myocyte-specific enhancer factor 2B
1tqe_Q5e-202088169Myocyte-specific enhancer factor 2B
1tqe_R5e-202088169Myocyte-specific enhancer factor 2B
1tqe_S5e-202088169Myocyte-specific enhancer factor 2B
6c9l_A5e-202088169Myocyte-specific enhancer factor 2B
6c9l_B5e-202088169Myocyte-specific enhancer factor 2B
6c9l_C5e-202088169Myocyte-specific enhancer factor 2B
6c9l_D5e-202088169Myocyte-specific enhancer factor 2B
6c9l_E5e-202088169Myocyte-specific enhancer factor 2B
6c9l_F5e-202088169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.47600.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed exclusively in stamens and carpels.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2186100.0AB218610.1 Citrus unshiu CitMADS1 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950555.11e-180floral homeotic protein AGAMOUS isoform X1
SwissprotQ408851e-131AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A067GH271e-179A0A067GH27_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2P0ZW271e-179A0A2P0ZW27_CITSI; MADS1 protein
STRINGXP_006467575.11e-180(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-126MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]