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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g036215m |
Common Name | CISIN_1g036215mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
MYB |
Protein Properties |
Length: 290aa MW: 32189.9 Da PI: 6.6705 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g036215m | genome | ICGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.6 | 5e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+l +++k+ G g+W+t +++ g+ R++k+c++rw +yl
orange1.1g036215m 27 KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYL 74
79******************************99************97 PP
|
2 | Myb_DNA-binding | 45 | 2.6e-14 | 85 | 123 | 6 | 46 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++E++l+++++++lG++ W++Ia +++ gRt++++k++w++
orange1.1g036215m 85 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNT 123
89***************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MRNPSSSSSS DGTKKITPCC SKVGIKKGPW TPEEDEILSN YIKREGEGQW RTLPKRAGLL 60 RCGKSCRLRW MNYLRPSIKR GHIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY 120 WNTRLRKKLI SQGINPTTHK PLIFNQVVHD QLASSSSTSN PNTPSLEIME EAGVSSTHQA 180 AATNFTTNYN IPIDGGFMMG SLLPSSHGHG HNCIGDYIDN CDEDTFSSFL DSLVNDDDFM 240 NHINEQQQQS SVSSYNNIGT IDWEFADVLS TKVGSDDQHG AAASLNDQL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |