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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036178m | ||||||||
Common Name | CISIN_1g036178mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 331aa MW: 36084 Da PI: 6.8271 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.7e-39 | 29 | 89 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+ss orange1.1g036178m 29 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRSS 89 57899****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 27 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.8E-33 | 31 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.674 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQDIHSIGGG RLFGGGGGDR RLRPHPHQNH QALKCPRCDS LNTKFCYYNN YNLSQPRHFC 60 KNCRRYWTKG GVLRNVPVGG GCRKTKRSSK PKPNSESSAQ TQTQTQTEAP AAGERDRKAN 120 SHSSSESSST LTVTNNNNNN NNTSVETVSV HSSSSVSNVL SAMNNNNNNN NNDPGFETAP 180 TTALLDQASS DCGIFSEIGS FTSLITSSNE ALPFGFSNLL NNAQQNLEHV QNEQQWQQEQ 240 QKLASASSMG GHHELKLHEM ASGLLDQTVH DELSALQDRS GNTGGFGSLD WHGSADHQGL 300 FDLPNAVDHA SYWSQSTQWT DQDHPSLYLP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 16 | GGRLFGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.6224 | 0.0 | flower| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440822.1 | 1e-179 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A067FHN4 | 0.0 | A0A067FHN4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5Q4Y9 | 0.0 | A0A2H5Q4Y9_CITUN; Uncharacterized protein | ||||
STRING | XP_006440822.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-39 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036178m |