PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g035712m
Common NameCISIN_1g035712mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 563aa    MW: 65069.3 Da    PI: 8.8506
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g035712mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.2e-08448488346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT+eE el  + ++++G++ Wk  a+ +g  + + ++k+ w+ 
  orange1.1g035712m 448 KWTPEELELVRKFHEKHGSN-WKMLANALG--KHRFHVKDAWRR 488
                        8*****************99.********9..667778887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0048372443IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-5375462IPR009057Homeodomain-like
SMARTSM007170.056445492IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-9446507IPR009057Homeodomain-like
CDDcd001670.00556448477No hitNo description
PROSITE profilePS500906.62448490IPR017877Myb-like domain
PfamPF139211.9E-11449507No hitNo description
Gene3DG3DSA:1.10.10.604.8E-10463500IPR009057Homeodomain-like
PROSITE profilePS500908.014491559IPR017877Myb-like domain
SMARTSM007172.8495561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-7501560IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
CFLSLGRHSL HQPFICRRSY VRLSVNPTPL VRRKQRFALV VCVIVEVFEE RPCVMGKKTL  60
GKKGHERENG IVTEGEVDFK EEEKKRDVDL RASENEVEMK DDVDENERKI NEVGGNDFEF  120
GDSRNGVIVE GHVDTNNTGS EKERQKKKKR KLEISEDENE IPKDMRINND EEVSEINEDS  180
KQKQLAMDEN ASLQKNYQED SGNNSELKVR KKRKKLLKEG MNNDGIGSSL SDNAEGNNKE  240
TREAIREREQ LDGNMMEKVE NGGKQKKKKK KNAHNDGTQA EKLCNANSRV EEIEGHAVLE  300
EDGIKEKKKA TSVKKHSGGD KKASQTKKGV EPNDLSEGSA QKERSKKVSF SNDVQVFPSS  360
DAKNGKDDGF VRGKRFSKEE DEMIKRAVMN YIETHGLGEE GLNMVLHCRS HPEVKHCWKE  420
IGSALPWRPY DSIYYRAHII FQRDENRKWT PEELELVRKF HEKHGSNWKM LANALGKHRF  480
HVKDAWRRVR LPNQKKGQWS QEEYQKLFDL VNMDLRMRAL EEKKTKHGML RDNISWEAIS  540
DKLATRSNAI CCMKWYDQLT SPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148ERQKKKK
2145150KKKKRK
3146151KKKRKL
4210214KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488047.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A067EYK10.0A0A067EYK1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006488047.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-92MYB_related family protein