PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030785m
Common NameCISIN_1g030002mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 172aa    MW: 19276.8 Da    PI: 4.9301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030785mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-1683131455
                AP2   4 kGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         GVr+++ +g+++AeIrdp     k  r++lg+f++  +Aaka++ a+ +++g
  orange1.1g030785m  83 EGVRRRP-WGKYAAEIRDP---ArKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 131
                        5******.**********8...4445**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.58981139IPR001471AP2/ERF domain
PRINTSPR003673.3E-118293IPR001471AP2/ERF domain
PfamPF008472.7E-1183131IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2083141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-2983140IPR001471AP2/ERF domain
CDDcd000187.97E-2884139No hitNo description
SMARTSM003805.8E-3184145IPR001471AP2/ERF domain
PRINTSPR003673.3E-11121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSNMTTLEEE SSILEFIRQF LLGDFTSLDD PNLSFLQPME SEFPVIKSEP DSPTFCEIIK  60
PEPLDITCLG SSNWTESPQK SSEGVRRRPW GKYAAEIRDP ARKGSRVWLG TFDSDVDAAK  120
AYDSAAFRMR GRKAILNFPL EAGADSPPAK NSRKRRREKT LDLQESTISI I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2680140161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-2680140464ATERF1
3gcc_A5e-2680140464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156RKRRR
2152158RKRRREK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9060745e-65AM906074.1 Citrus medica mRNA for ethylene-responsive element binding protein (erebp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490013.31e-119ethylene-responsive transcription factor ERF107
SwissprotQ9LY056e-37EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A067DAX31e-121A0A067DAX3_CITSI; Uncharacterized protein
STRINGXP_006490013.11e-118(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-38ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]