PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030591m
Common NameCISIN_1g030591mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 176aa    MW: 19048.2 Da    PI: 4.8336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030591mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.1e-161362155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+G+r +    +Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  orange1.1g030591m 13 PSYRGIRCRN--SKWVSEIREPRK---STRIWLGTYPTPEMAAAAYDVAALALKG 62
                       579***9655..6********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-101362IPR001471AP2/ERF domain
CDDcd000188.23E-171371No hitNo description
SuperFamilySSF541714.51E-181471IPR016177DNA-binding domain
SMARTSM003801.8E-271478IPR001471AP2/ERF domain
PROSITE profilePS5103219.6511470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-261471IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAAAPSSSTK KHPSYRGIRC RNSKWVSEIR EPRKSTRIWL GTYPTPEMAA AAYDVAALAL  60
KGSDAVLNFP NFVSTYPVPA SSSSVDIRNA AAAAAASCAR RKAESVSDPD ENQRMEQSRS  120
NDVIGEFVDE DALLNMPNLL VDMAEGMMVS PPRLNSSPSD DSPENSDGER LWSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1311711173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477389.21e-124ethylene-responsive transcription factor ERF027
SwissprotQ9FJ905e-55ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A067F8541e-124A0A067F854_CITSI; Uncharacterized protein
STRINGXP_006477389.11e-124(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-46ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]