PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030547m
Common NameCISIN_1g030547mg, LOC102625647
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 176aa    MW: 18870.1 Da    PI: 6.117
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030547mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.22.5e-5826123198
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre
  orange1.1g030547m  26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
                        69****************************************************************************************** PP

              NF-YB  93 legekk 98 
                        +eg++k
  orange1.1g030547m 118 MEGDTK 123
                        ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.2E-5423132IPR009072Histone-fold
SuperFamilySSF471132.64E-4029132IPR009072Histone-fold
PfamPF008081.8E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.2E-206078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.2E-207997No hitNo description
PRINTSPR006153.2E-2098116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAEAPTSPAG GSHESGGEQS PHAGGVREQD RYLPIANISR IMKKALPANG KIAKDAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLWAMATLG FEDYIDPLKA YLMRYREMEG  120
DTKGSARGGD GSAKRDTIGA LPGQNAQYAL QGPLNYANPH AQGQHMIVPS MQGNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4725117193NF-YB
4awl_B2e-4725117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4725117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.48160.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436200.11e-129nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_006485940.11e-129nuclear transcription factor Y subunit B-1
SwissprotQ8VYK44e-86NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067DNX21e-128A0A067DNX2_CITSI; Uncharacterized protein
TrEMBLV4TCX21e-128V4TCX2_9ROSI; Uncharacterized protein
STRINGXP_006485940.11e-128(Citrus sinensis)
STRINGXP_006436200.11e-128(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-88nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]