PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

orange1.1g030079m

Common Name

CISIN_1g027074mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 184aa MW: 21368.2 Da PI: 6.4995

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g030079m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	43.4	1.1e-13	29	83	73	128
NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++n ++++g W+a+g++ e++s ++ +g ++tL f++g+ p+ +ktdWvm+e+r+ orange1.1g030079m 29 KENTSAQHGQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 83 56667899************.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.083	1	106	IPR003441	NAC domain
Pfam	PF02365	1.3E-7	13	83	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-19	18	106	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MMSILTTIGP QIYLNCNVPD GVWYLVCSKE NTSAQHGQWR AKGETCEIFS NSYIIGWRTT 60 LEFFEGQVPN ERKTDWVMQE FRITQKRLYG DKKEEDSSSL CRVFLSGKQS PNHEMQQKLF 120 SANINNETHS HSTELSFDKD KDDTRQVSII RHEVCQPQHS GLVFCLLEWI SCLNFVWFSL 180 IFK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024952496.1	1e-106	NAC transcription factor 29-like isoform X3
TrEMBL	A0A067H9Y2	1e-135	A0A067H9Y2_CITSI; Uncharacterized protein
STRING	XP_006473456.1	8e-97	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	7e-14	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g030079m