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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029627m | ||||||||
Common Name | CISIN_1g029627mg, LOC102622754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21284.7 Da PI: 6.5148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ ++r++lg+f +e+Aa+a++ a+ +l+g orange1.1g029627m 38 PVYRGVRKRR-WGKWVSEIREPRK---KTRIWLGSFPVPEMAARAYDVAAYCLKG 88 68*****887.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 38 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 39 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.1E-36 | 39 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 39 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 39 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.69E-31 | 40 | 97 | No hit | No description |
PRINTS | PR00367 | 1.4E-12 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-12 | 78 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEQQPYTYTE HELTDSATAT ATAIHRKSSS QTGGTRHPVY RGVRKRRWGK WVSEIREPRK 60 KTRIWLGSFP VPEMAARAYD VAAYCLKGRK AQLNFPDKVE ALPRPSTRAA RDIQEAAAKA 120 AHAGLISSEK SDVSESDGDD FWGEIELPEL MNGGWYSNSC GWTFSCDTTS TWIDEDAQPQ 180 EQQPPSMACL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 34 | 96 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444825.1 | 1e-141 | ethylene-responsive transcription factor ERF023 | ||||
Refseq | XP_006495413.1 | 1e-141 | ethylene-responsive transcription factor ERF023 | ||||
Swissprot | Q1ECI2 | 1e-58 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A067H6E4 | 1e-140 | A0A067H6E4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P047 | 1e-140 | A0A2H5P047_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U1Y3 | 1e-140 | V4U1Y3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006495413.1 | 1e-140 | (Citrus sinensis) | ||||
STRING | XP_006444825.1 | 1e-140 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7659 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 3e-60 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029627m |
Entrez Gene | 102622754 |
Publications ? help Back to Top | |||
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