PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029424m
Common NameCISIN_1g029424mg, LOC107178343
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 194aa    MW: 21519.7 Da    PI: 5.3797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029424mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000353254123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C++ Fs+   L  H++ H
  orange1.1g029424m 32 YDCTFCKRGFSNAQALGGHMNIH 54
                       88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-63059No hitNo description
Gene3DG3DSA:3.30.160.609.6E-53058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3443259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
METDHDPPSQ ENQEQETSDD QQRAAASPIR SYDCTFCKRG FSNAQALGGH MNIHRKDKAK  60
LKQAASSNNL YQQSFDISKI RASYSQISTI RPSMEVMSNS QDRSIATQRP NWILGAENDA  120
MKTEKTQVGD VRKLSLFVEG SSPLKIDQRE ATSTEKGLLS SSSEEEDLDL ELRLGPEPRQ  180
DSSTPATGTK KFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388797.11e-143transcriptional regulator TAC1
TrEMBLA0A067FTW81e-141A0A067FTW8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NCW41e-141A0A2H5NCW4_CITUN; Uncharacterized protein
STRINGXP_006424902.11e-141(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-17C2H2 family protein