PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 203aa MW: 23179.2 Da PI: 9.1747

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028922m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.4	1e-20	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l++a++ +G++ Wk++a++ g++R++k+c++rw +yl orange1.1g028922m 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYL 62 89********************************************97 PP
2	Myb_DNA-binding	50.7	4e-16	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l orange1.1g028922m 68 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 78999***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.447	10	66	IPR017930	Myb domain
SMART	SM00717	1.1E-16	14	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.21E-30	14	109	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-19	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-25	16	69	IPR009057	Homeodomain-like
CDD	cd00167	5.35E-12	17	62	No hit	No description
PROSITE profile	PS51294	20.918	67	117	IPR017930	Myb domain
SMART	SM00717	1.9E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	68	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.4E-25	70	118	IPR009057	Homeodomain-like
CDD	cd00167	3.37E-10	72	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVTVSSQCTK KEANRGAWTA EEDQKLAQAI EVHGPKKWKS VAAKAGLNRC GKSCRLRWMN 60 YLRPHIKRGN ISDQEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIKQN 120 EKPSRGSTAK DLELEISKGE EKGSTVQKRS GDLEGTFYAD GGSKLFSFVG DNKFFDCYND 180 EPLNLEWMSR FFEIDESWFD FA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-30	12	117	24	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB573149	0.0	AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453005.1	1e-148	transcription factor MYB114
Swissprot	Q38850	7e-54	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A067G1W9	1e-148	A0A067G1W9_CITSI; Uncharacterized protein
STRING	XP_006453005.1	1e-148	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-56	myb domain protein 5

Link Out ? help Back to Top
Phytozome	orange1.1g028922m

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]