PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028717m
Common NameCISIN_1g028717mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 206aa    MW: 23841.4 Da    PI: 10.2357
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028717mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.41.6e-3036123290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek+gkw+vt++++eHnH+l+
  orange1.1g028717m  36 FYDAYATHMGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKTGKWVVTRFVKEHNHPLV 123
                        9*******************************************99.9***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2836123IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MMENVNDQEM AVTKGSSDGE PYLGMEFESE EAAKVFYDAY ATHMGFIMRV DAFRRSMRDG  60
KVVWRRLVCN KEGFRKLRPR RSENRKPRAV TREGCKAMIV VKKEKTGKWV VTRFVKEHNH  120
PLVAIPANGR RSVLLSQTPD EKDVKIRELT AELQRERKRS AAYQEQLEMV LRDMENHSHH  180
LSRNIDDIVQ SVKQIEAKRI AASHC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.60984e-38callus| flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447969.11e-151protein FAR1-RELATED SEQUENCE 1
RefseqXP_006492211.11e-151protein FAR1-RELATED SEQUENCE 1
SwissprotQ9SZL82e-29FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067ETW41e-151A0A067ETW4_CITSI; Uncharacterized protein
STRINGXP_006492211.11e-151(Citrus sinensis)
STRINGXP_006447969.11e-151(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135242227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.13e-93FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]