PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g028646m | ||||||||
Common Name | CISIN_1g0269011mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 207aa MW: 22103.6 Da PI: 4.7639 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.3 | 4e-19 | 39 | 83 | 1 | 42 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisae 42 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misae orange1.1g028646m 39 QLQMFWSYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAE 83 89*****998899******************************98 PP | |||||||
2 | NF-YC | 46.5 | 8.2e-15 | 82 | 118 | 66 | 102 |
NF-YC 66 aeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 aeenkrrtl+k+diaaa+trtdifdflvdivprde+k orange1.1g028646m 82 AEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 118 79********************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.76E-19 | 27 | 108 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.4E-13 | 53 | 82 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-5 | 61 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.9E-10 | 83 | 114 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MENNQQGQSS SYPPQPPSAA AAATATAPFH HLIQQQQQQL QMFWSYQRQE IEQANDFKNH 60 QLPLARIKKI MKADEDVRMI SAEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE 120 AAGLGGMVGA TASGVPYYYP PMGQPTGTAG PGGMMIGRPA VDPTGVYVQP PSQAWQSVWQ 180 TPAGTGDDGS YGSGGSGGPA NLDGQG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-33 | 47 | 114 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 86 | 92 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.3802 | 0.0 | callus| flower| fruit| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436849.1 | 1e-108 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_006493208.1 | 1e-108 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_024042168.1 | 1e-108 | nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 6e-91 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A067DWE4 | 1e-149 | A0A067DWE4_CITSI; Uncharacterized protein | ||||
STRING | XP_006493208.1 | 1e-108 | (Citrus sinensis) | ||||
STRING | XP_006436849.1 | 1e-108 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-86 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g028646m |
Publications ? help Back to Top | |||
---|---|---|---|
|