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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g027468m |
Common Name | CISIN_1g027468mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
HD-ZIP |
Protein Properties |
Length: 224aa MW: 25881.8 Da PI: 5.0945 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g027468m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.7 | 8.5e-18 | 39 | 91 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++f++eq++ Le +Fe++ p +++ ++A++lgL+ rqV +WFqN+Ra+ k
orange1.1g027468m 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91
568************************************************99 PP
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2 | HD-ZIP_I/II | 102.9 | 2.7e-33 | 38 | 129 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+krr+s+eqvk+LE +Fe+e + e++ K+++a eLglqprqva+WFqn+RAR ktkq+E++y++Lk+++++l+++ e +++e++ L +l++
orange1.1g027468m 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQK 129
79***********************************************************************************9999986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MNSEIPETTA AAAVKFRGLN LDWTDMQQPI ASFGTGNNKR RFSDEQVKSL EFMFESEARP 60 ESRMKHRMAD ELGLQPRQVA IWFQNKRARS KTKQIEREYT KLKAEFETLA SSYELMRREH 120 QLLLVQLQKL KNLLGKGHED TNENSGDRKS ENEITTESNE RPSQIYVPSS DDRSRNIEST 180 VIMKDFAATN VEEQTESSGN WCKFESGFLD ETSSTLPWWE LWS*
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