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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027188m | ||||||||
Common Name | CISIN_1g022221mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 228aa MW: 23996.1 Da PI: 9.1456 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 6e-08 | 34 | 59 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C+FaHg+ orange1.1g027188m 34 KSRLCNKYNSAEGCKFGDKCHFAHGE 59 6799******99************96 PP | |||||||
2 | zf-CCCH | 37.5 | 4e-12 | 194 | 218 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg orange1.1g027188m 194 FKTKLCENFAK-GSCTFGDRCHFAHG 218 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 30 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-8 | 31 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.025 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-6 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 9.06E-15 | 97 | 174 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 9.4E-13 | 103 | 173 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.9 | 104 | 168 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 8.1E-16 | 104 | 172 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.1E-11 | 106 | 170 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.41E-14 | 108 | 168 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-16 | 190 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 193 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.084 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-9 | 193 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 194 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLNLGGTPAH PPPPPRNSGA PPSFPDGSSP PAVKSRLCNK YNSAEGCKFG DKCHFAHGEW 60 ELGRPTVPSY EDPRAMGGPM HGRMGGRLEP PPQSLGAAAS FGASATAKIS IDAKLAGAII 120 GKNGVNSKQI CRLTGAKLSI RDHEVDPNLR NIELEGTFDQ IKQASAMVRE LIVNVGSGSG 180 HSMKSNSSSQ SNNFKTKLCE NFAKGSCTFG DRCHFAHGSE ELRKSVI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1544 | 0.0 | flower| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445923.1 | 1e-166 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_006492659.1 | 1e-166 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 3e-84 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A067EYY6 | 1e-166 | A0A067EYY6_CITSI; Uncharacterized protein | ||||
STRING | XP_006492659.1 | 1e-165 | (Citrus sinensis) | ||||
STRING | XP_006445923.1 | 1e-165 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-50 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027188m |