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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027107m | ||||||||
Common Name | CISIN_1g027107mg, LOC102608812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25154.9 Da PI: 4.8334 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.7e-19 | 42 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g orange1.1g027107m 42 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 92 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-13 | 42 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 43 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 43 | 101 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-36 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 43 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-32 | 44 | 102 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSEPQNSSEA ESSSSNSSLS PTNAHQDSKK IKRMRDQSSK HPVYRGVRMR NWGKWVSEIR 60 EPRKKSRIWL GTFPTPEMAA RAHDVAALSI KGNSAILNFP ELADSLPRPN SLAPRDVQAA 120 AAKAAQMDKF DSSSSSSLSS LVSAMDLSTG SEELSEIVEL PSLGSSYDYK SSELRNEFVF 180 VDSVDGWMYT PPWFQSVEVE DYQFGVLPES SVFSSTNFGL GEGLLWDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 35 | 101 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476039.1 | 1e-165 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 2e-82 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A067GWX2 | 1e-163 | A0A067GWX2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P7I2 | 1e-163 | A0A2H5P7I2_CITUN; Uncharacterized protein | ||||
TrEMBL | A0A2H5P7J1 | 1e-163 | A0A2H5P7J1_CITUN; Uncharacterized protein | ||||
STRING | XP_006476039.1 | 1e-164 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 9e-79 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027107m |
Entrez Gene | 102608812 |
Publications ? help Back to Top | |||
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