 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g026941m |
Common Name | CISIN_1g026941mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
Family |
LSD |
Protein Properties |
Length: 231aa MW: 24997.3 Da PI: 8.5505 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g026941m | genome | ICGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 40.8 | 3.6e-13 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr +L YPrGA++V+CalC+t+
orange1.1g026941m 67 CSGCRSVLLYPRGATNVCCALCNTI 91
***********************97 PP
|
2 | zf-LSD1 | 49.1 | 9e-16 | 106 | 130 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+rGA+sVRC++C+tV
orange1.1g026941m 106 CGGCRTLLMYTRGATSVRCSCCHTV 130
************************9 PP
|
3 | zf-LSD1 | 45.1 | 1.6e-14 | 144 | 168 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP GApsV+Ca+C+ V
orange1.1g026941m 144 CGHCRTTLMYPHGAPSVKCAVCQYV 168
**********************987 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000303 | Biological Process | response to superoxide |
GO:0001666 | Biological Process | response to hypoxia |
GO:0002240 | Biological Process | response to molecule of oomycetes origin |
GO:0009626 | Biological Process | plant-type hypersensitive response |
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
GO:0010618 | Biological Process | aerenchyma formation |
GO:0043069 | Biological Process | negative regulation of programmed cell death |
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MPLRGFHLIH NEIKKPNQTK QIKLSFFIFL FLFIYINHTI TQLSIDFDFS NDSILLSLQG 60 MQSQLVCSGC RSVLLYPRGA TNVCCALCNT ITSVPIPGME MAQLICGGCR TLLMYTRGAT 120 SVRCSCCHTV NLAPAPNQFA HIICGHCRTT LMYPHGAPSV KCAVCQYVTN VNMANARVPL 180 PANRPNGTAI PGTLPSTSMT QTVVVENPMS VDESGKLVSN VVVGVSTEKK *
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Publications
? help Back to Top |
- Spedaletti V, et al.
Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana. Biochemistry, 2008. 47(17): p. 4936-47 [PMID:18393445] - Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties. Plant Cell Rep., 2016. 35(3): p. 527-39 [PMID:26754794] - Czarnocka W, et al.
The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator. Plant Cell Environ., 2017. 40(11): p. 2644-2662 [PMID:28555890] - Bernacki MJ, et al.
LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana. Physiol Plant, 2019. 165(2): p. 369-382 [PMID:30461017]
|