PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 233aa MW: 26024.7 Da PI: 8.4064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g026840m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.7e-11	57	79	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f +tG+C++Gd+Ck+ H++ orange1.1g026840m 57 VCSRFVKTGFCPFGDSCKYLHPK 79 5********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	0.0082	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	6.25E-15	4	60	No hit	No description
Pfam	PF06220	7.4E-10	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	15.028	52	80	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-5	53	79	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-7	56	80	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-7	57	78	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-8	57	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTYF ARKRHLQGIQ HLRAKALWYD SLNETNQTYP DGFPKGVCSR 60 FVKTGFCPFG DSCKYLHPKN NPAQNTGNQG LRATGFTDIN ARSSSVDQRI YLAGGSSFPG 120 DMMRDSMGMS WGNLPPSLKP PPEGGYPLLP LWIGDSSAVS FSHPICWITN VKLSYGYMSC 180 NMNVSSISAI SVVQCGYCVT CRVKICSGID HTLNAYILHD WKSETCIRVW YI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428241.1	1e-108	zinc finger CCCH domain-containing protein 3
Refseq	XP_015386408.1	1e-108	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	5e-38	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A067E275	1e-174	A0A067E275_CITSI; Uncharacterized protein
STRING	XP_006480284.1	1e-107	(Citrus sinensis)
STRING	XP_006428241.1	1e-107	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10474	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-35	C3H family protein

Link Out ? help Back to Top
Phytozome	orange1.1g026840m

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]