PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026556m
Common NameCISIN_1g026556mg, LOC102622391
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 238aa    MW: 26215.9 Da    PI: 7.6606
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026556mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.81.6e-42801791100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a
  orange1.1g026556m  80 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQA 171
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  orange1.1g026556m 172 QLAKAQAE 179
                        ****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.07779180IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4280177IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MECKHKINVA IPITNMKNTQ FSSPSTFSTS PPSQSSPRFP SPNHQQLSSP ESSPSFKASP  60
SQSSPNLAAP LSPPPIVLSP CAACKILRRR CVEKCVLAPY FPPTEPYKFT IAHRVFGASN  120
IIKFLQELPE SQRADAVSSM VYEASARIRD PVYGCAGAIC HLQKQVSELQ AQLAKAQAEL  180
VTMESQQRNL ITLICMEMAQ SQEQVLQQQQ QQQQQFMDTS CFLDDNGIGS AWEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-42681811112LOB family transfactor Ramosa2.1
5ly0_B3e-42681811112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436214.21e-174LOB domain-containing protein 1
RefseqXP_006485928.11e-174LOB domain-containing protein 1 isoform X2
SwissprotQ9LQR02e-74LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A067E1551e-172A0A067E155_CITSI; Uncharacterized protein
TrEMBLA0A2H5NZ661e-172A0A2H5NZ66_CITUN; Uncharacterized protein
STRINGXP_006485928.11e-173(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-63LOB domain-containing protein 1