PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026263m | ||||||||
Common Name | CISIN_1g026263mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HSF | ||||||||
Protein Properties | Length: 242aa MW: 26755.2 Da PI: 9.1618 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 71.7 | 1.4e-22 | 15 | 73 | 36 | 103 |
HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 36 fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 fak++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF++++F++g++ell++i+r+k++ orange1.1g026263m 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK---------WEFANENFRRGHRELLTEIRRRKTA 73 99*****************************999.........**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.7E-21 | 2 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.62E-18 | 14 | 70 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.2E-21 | 15 | 70 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.3E-19 | 15 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-10 | 19 | 31 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 20 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-10 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MKVAPLLLSG KLLIFAKDLL PNYFKHNNFS SFVRQLNTYG FRKIVADKWE FANENFRRGH 60 RELLTEIRRR KTATGPSAQT AGKTKATSPS NSGEDMGSTS TSSPESKNQG SVETAKFADL 120 SDENAKLRRD NETLSSELAQ AKKQCDELIT FLTEYVKVGP DQINRIMGQG SCGSILDGLV 180 GDTDDDEKME SSGGDLKLFG VWLKGERKKR AREETVVCGG SHEMKKVEFR APYINSSKVC 240 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-14 | 15 | 74 | 54 | 124 | Heat shock factor protein 1 |
5d5u_B | 2e-14 | 15 | 72 | 63 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-14 | 15 | 72 | 63 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-14 | 15 | 72 | 63 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3784 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006466606.1 | 1e-168 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 7e-83 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A067GUZ0 | 1e-179 | A0A067GUZ0_CITSI; Uncharacterized protein | ||||
STRING | XP_006466606.1 | 1e-168 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-70 | heat shock factor 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026263m |
Publications ? help Back to Top | |||
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