PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026083m | ||||||||
Common Name | CISIN_1g024141mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 244aa MW: 28845.5 Da PI: 10.3779 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.3e-07 | 71 | 94 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr + + tC++G+ C+F+H orange1.1g026083m 71 REATCRQYEE-NTCNRGGYCNFMHL 94 6789**9999.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01848 | 1.3E-23 | 24 | 46 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 4.48E-10 | 28 | 70 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 1.3E-9 | 29 | 66 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 1.3E-23 | 51 | 75 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 11.122 | 69 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-5 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 1.3E-23 | 86 | 98 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MYQRLDMITP GVDAQGNPLD PRKIQEHFEV GNVYVQFREE EQAARALKSL SGRFYAGRPI 60 IVDFSPVTDF REATCRQYEE NTCNRGGYCN FMHLKRISRD LRRQLFGRYR RRHSRSRSRS 120 RSPYRHRSHE DRSHSGHGRR YDDRDKYYES RSRRHRSTSP SHRRGRSRSP GGRRYHSPVR 180 EGSEERRAKI EQWNREREQQ EEAYKGNTDG GNNDQGINND GLMQNGNGYH SYKQQPEQGG 240 NEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 6e-23 | 30 | 111 | 104 | 185 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.10735 | 3e-82 | callus| flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424345.1 | 1e-168 | splicing factor U2af small subunit A | ||||
Swissprot | Q9ZQW8 | 5e-66 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | A0A067DRZ5 | 1e-177 | A0A067DRZ5_CITSI; Uncharacterized protein | ||||
STRING | XP_006424345.1 | 1e-167 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 2e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026083m |
Publications ? help Back to Top | |||
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