PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g025958m | ||||||||
Common Name | CISIN_1g018583mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 246aa MW: 28194.5 Da PI: 9.1245 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.1 | 1.7e-32 | 183 | 237 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ orange1.1g025958m 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.546 | 180 | 240 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.29E-17 | 181 | 239 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-29 | 182 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 183 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.9E-9 | 187 | 236 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MNTQKLNFQE TFQKKHLDFG PPSQYFGDIH HQQPWMMRTT TQQHQNLDHA RSPSTILSRF 60 ESPASAFYAT ERYMGFCQYD SQAAGNNCSQ FSRTCDSSQQ FHLYQSPGEN FSVLSAEQAV 120 PLEIPWNFYK SPEASCINPL GKQYSGPFDE HQDHRGYASH QEKQSPRFSS SSSFSTGPVI 180 TNKTRIRWTQ DLHEKFVECV NRLGGADKAT PKAILKLMDS EGLTIFHVKS HLQKYRMAKK 240 IREKK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-22 | 183 | 239 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-22 | 183 | 239 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-22 | 183 | 239 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-22 | 183 | 239 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-22 | 183 | 239 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015380887.1 | 1e-173 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 6e-38 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A067E515 | 0.0 | A0A067E515_CITSI; Uncharacterized protein | ||||
STRING | XP_006429845.1 | 1e-166 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.2 | 3e-36 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g025958m |