PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 261aa MW: 29072.8 Da PI: 8.5668

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024915m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	101	155	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q +Le+ F++++++s ++++ LA+kl+L rqV vWFqNrRa+ k orange1.1g024915m 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSK 155 788899***********************************************98 PP
2	HD-ZIP_I/II	117.7	6.5e-38	101	189	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k q ++LE++F+e+++L+p++K+ la++L+l+prqv+vWFqnrRAR k+kq+E+++e Lkr++++lk+en+rL++ev+eL++ orange1.1g024915m 101 RKKLRLTKPQFATLEDTFKEHSTLSPKQKQGLAEKLNLRPRQVEVWFQNRRARSKLKQTEVECELLKRCCEKLKDENKRLQREVQELKS 189 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-18	84	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-18	88	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	97	157	IPR001356	Homeobox domain
SMART	SM00389	2.7E-15	99	161	IPR001356	Homeobox domain
CDD	cd00086	7.61E-15	100	158	No hit	No description
Pfam	PF00046	6.1E-17	101	155	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	132	155	IPR017970	Homeobox, conserved site
SMART	SM00340	3.6E-19	157	200	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-9	157	191	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEFDDSTCLG LGIQGALPQS DDHDHQKKNG KKLILKDDQL LPSLTLGRRS ENTLKSATKE 60 KESTDVLQQA SCMSMSMSAL SSISNSKGIR DHHEDEGGSP RKKLRLTKPQ FATLEDTFKE 120 HSTLSPKQKQ GLAEKLNLRP RQVEVWFQNR RARSKLKQTE VECELLKRCC EKLKDENKRL 180 QREVQELKSM KLSGAPLYMK LPAPTLTVCP SCDEKLDGGD GRDVYGDGYG DGDGSSTSRS 240 SFTFGSKHLY NSFTHPSAFC *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	157	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433687.1	0.0	homeobox-leucine zipper protein HAT9
Swissprot	P46603	2e-62	HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBL	A0A067GP26	0.0	A0A067GP26_CITSI; Uncharacterized protein
TrEMBL	A0A2H5P6Q2	0.0	A0A2H5P6Q2_CITUN; Uncharacterized protein
STRING	XP_006433687.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32624	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	7e-60	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g024915m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]