PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 265aa MW: 30322.8 Da PI: 5.0083

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024675m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q+++Le+ Fe ++++ +++ +LA++lgL+ rq+ vWFqNrRa+ k orange1.1g024675m 57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110 56689***********************************************98 PP
2	HD-ZIP_I/II	124.4	5.4e-40	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy Lk++ydal+ + ++L++e+e+L++el+ orange1.1g024675m 56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELR 147 69***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 e orange1.1g024675m 148 E 148 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-18	48	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	52	112	IPR001356	Homeobox domain
SMART	SM00389	8.6E-18	55	116	IPR001356	Homeobox domain
CDD	cd00086	2.46E-15	57	113	No hit	No description
Pfam	PF00046	2.3E-15	57	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-19	59	118	IPR009057	Homeodomain-like
PRINTS	PR00031	9.9E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.9E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.6E-15	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MKRFSSSDSF DALITVYKSA DKTSTKRKQI YGREFQAMMD CLEEEDCREE ASQATEKKRR 60 LTVDQVKALE KNFEVDNKLE PDRKVKLAEE LGLQPRQIAV WFQNRRARLK SKELERDYGL 120 LKANYDALRL DYNNLQQENE ALTAELRELK AKLCQENEET SHAVEAEAPV SEQSKNHVSS 180 ENANAQLLTS PPSFSPLFTG SSSSSHPSMN WVQFSDSRTI LSNVYQQPQL VKVEEQSLLF 240 NPEDPCNIFS VDQAPTLQWY FTGH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11787	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006472553.1	0.0	homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBL	A0A067GZZ6	0.0	A0A067GZZ6_CITSI; Uncharacterized protein
STRING	XP_006472553.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	2e-52	homeobox protein 6

Link Out ? help Back to Top
Phytozome	orange1.1g024675m