 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g024542m |
| Common Name | CISIN_1g019057mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
Trihelix |
| Protein Properties |
Length: 267aa MW: 28889.3 Da PI: 5.8391 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g024542m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 92.1 | 5.6e-29 | 47 | 141 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e+ +++++s +++ +
orange1.1g024542m 47 RWTRQEILVLIQGKRVAENRVRRGRaagmgfgsgQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRN 138
8**********************97778888888*********************************************9999999999999 PP
trihelix 84 qle 86
+l+
orange1.1g024542m 139 DLR 141
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0050777 | Biological Process | negative regulation of immune response |
| GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MALEQLSLAR TPVDGETDGV NNGVEQRTTT ASIDGGDDGC KAPRLPRWTR QEILVLIQGK 60
RVAENRVRRG RAAGMGFGSG QIEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK 120
EWESHVKDGT ESFWVMRNDL RRERKLPGFF DREVYDILDG AATVASSASP GLGLALAPAE 180
ETTTDEAVFD SGRSAAADDG LFSDFEPEET TGTPVKDDAP AEAAPAAAKP ISATMPIPEK 240
QYQPNLRGCH GQGIPLFTSF FFSPCS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
