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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024493m | ||||||||
Common Name | CISIN_1g024477mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 268aa MW: 29349.4 Da PI: 5.8811 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.8e-10 | 88 | 135 | 3 | 50 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ + rr NReA r++R++Kka ++ Lee+vk+L + N++L +l+ orange1.1g024493m 88 SVSKPRRSSGNREAVRKYREKKKAHTAYLEEEVKKLHTLNQQLVRKLQ 135 5567789999*********************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-12 | 80 | 153 | No hit | No description |
SMART | SM00338 | 3.4E-8 | 84 | 153 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.611 | 88 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.81E-7 | 91 | 135 | No hit | No description |
Pfam | PF07716 | 9.2E-14 | 92 | 135 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 9.82E-9 | 98 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MRQNMDDGEV ELSDHALLLN QEFSRNFHNS ASVDSFLDEF LKNTKTCTHT HTCNPPGPDA 60 AHTHTCYHTH TQVIASEEDN HSNSKENSVS KPRRSSGNRE AVRKYREKKK AHTAYLEEEV 120 KKLHTLNQQL VRKLQGQAIL EAEFLRLRSL LADFRGKIDD ELGVFPYQKQ CNGVAILKEG 180 DCGLQSNGEA VGLGCQAEVP CFHPQAGSSS HAGTDGSEKM LASREGNCQP AVIDCQANTY 240 DVVSAEGRTL DAVEALVSPS SQAELAD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3490 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438937.1 | 1e-176 | basic leucine zipper 24 | ||||
Refseq | XP_006438938.1 | 1e-176 | basic leucine zipper 24 | ||||
Refseq | XP_006482937.1 | 1e-176 | basic leucine zipper 24 | ||||
Refseq | XP_006482938.1 | 1e-176 | basic leucine zipper 24 | ||||
Swissprot | Q8GTS2 | 3e-54 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A067GUJ0 | 0.0 | A0A067GUJ0_CITSI; Uncharacterized protein | ||||
STRING | XP_006482937.1 | 1e-175 | (Citrus sinensis) | ||||
STRING | XP_006438937.1 | 1e-175 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-34 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024493m |
Publications ? help Back to Top | |||
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