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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024223m | ||||||||
Common Name | CISIN_1g024223mg, LOC102620244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CAMTA | ||||||||
Protein Properties | Length: 271aa MW: 31243.7 Da PI: 9.2261 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 118.8 | 2.7e-37 | 12 | 127 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ke k+rwlk+ee++ +L+n+ek+ lt++++++p+sgsl+L+n +++ +fr+DG+ w+k k+ + v E+he+L +l cyYa +++np+ orange1.1g024223m 12 KEaKSRWLKPEEVLFVLQNHEKFGLTEAPPQKPPSGSLFLFNTRILDFFREDGHIWRKMKNTRIVSEAHERLETADGLALDCYYAFGKQNPN 103 5669************************************************************************9*************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrr+y + + + vlvhy++v orange1.1g024223m 104 FQRRVYSMAAYLYGHLVLVHYRDV 127 **********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 57.022 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.0E-48 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.5E-36 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MQAGYEIDVL FKEAKSRWLK PEEVLFVLQN HEKFGLTEAP PQKPPSGSLF LFNTRILDFF 60 REDGHIWRKM KNTRIVSEAH ERLETADGLA LDCYYAFGKQ NPNFQRRVYS MAAYLYGHLV 120 LVHYRDVSLT KASITKVDLE CIFPITNFVL ELPSAVFDQL SSVRKPQYAL LSMLMSFAAL 180 LICIVELICT CRKQRVRWKW IRTLPWLYHP RNRPFCDFKD IIGPVCALCQ CIFAAVTYGF 240 ARQHADSPIK VSFWPIVFAS GLLLSKHLAK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006492475.1 | 0.0 | uncharacterized protein LOC102620244 | ||||
TrEMBL | A0A067DQI3 | 0.0 | A0A067DQI3_CITSI; Uncharacterized protein | ||||
STRING | XP_006492475.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3838 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-48 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024223m |
Entrez Gene | 102620244 |