PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023002m
Common NameCISIN_1g020671mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 290aa    MW: 32648.2 Da    PI: 6.4272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023002mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-12185210126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  orange1.1g023002m 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9182215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878184212IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10185210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12185215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.0E-9257288IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.62E-9261287No hitNo description
PfamPF000972.2E-4262288IPR018957Zinc finger, C3HC4 RING-type
CDDcd001623.50E-5262288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAESGSGEAQ QAEQVCNFFR KPTKNKNIRK RTIREDEDED SIESSVLQNL KKPTKPDSKL  60
YFSTGPSKRD TSADSNADSE KPIFQFESSK EIQVQHDSKA TATLETETDF LRDSRALREK  120
VLKRSEEALK GKASGDEKLY KGIHGYVDHK AGFRREHTVS SEKAGGSHGP LRASAHIRVT  180
ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM EKEWEEAEKA RKRNLALGGG  240
DSDEEGVGQS DDDDEDSLPF ACFICRKPFV DPVVTKCKHY FCEHCALKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-5197288113288RING finger protein 113A
5z58_M2e-5197288113288RING finger protein 113A
6ff4_t2e-5197288113288RING finger protein 113A
6ff7_t2e-5197288113288RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.124210.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439792.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_006476759.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-147C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG61e-146C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A067G2140.0A0A067G214_CITSI; Uncharacterized protein
STRINGXP_006476759.10.0(Citrus sinensis)
STRINGXP_006439792.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-133C3H family protein