 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g022964m |
| Common Name | CISIN_1g019954mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 290aa MW: 33313.9 Da PI: 4.481 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g022964m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.2 | 1.6e-19 | 52 | 105 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k
orange1.1g022964m 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.5 | 5.7e-41 | 51 | 142 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+
orange1.1g022964m 51 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 142
69**************************************************************************************9875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MTSLINSGPR SMVSFEDVHL ANGSNNRPFF RPFDRDENGD EDFDEYFHQP EKKRRLTVDQ 60
VQFLEKSFEV ENKLEPERKI QLAKDLGLQP RQVAIWFQNR RARWKTKQLE KDYDVLQNSY 120
NSLKADYDNL FKEKEKLKAE VLKLTDKLQV KEKESKNTEL PVVNKQEPPQ ISEPVADSAA 180
SEGKVCKASV VACKQEDISS AKSDIFDSDS PNYTDGVHSS LLETCDSSYV FEPEQSDLSQ 240
DEDDSLSKNV LLPPYVFPKL EETEYSDPPT NSCNFGFPIE DHAFWSWSF*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 99 | 107 | RRARWKTKQ |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KR492082 | 0.0 | KR492082.1 UNVERIFIED: Citrus sinensis clone 170-1k mRNA sequence. |
| GenBank | KR492150 | 0.0 | KR492150.1 UNVERIFIED: Citrus maxima clone 170-1 mRNA sequence. |
