 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g022801m |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 293aa MW: 32328.4 Da PI: 10.285 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g022801m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 352.4 | 9.6e-108 | 1 | 292 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia..erdaki....rernlalsekkaavaerd.........maflqrdkalaernkalver 77
mddd+ + rn+gyyep+ +k +lglqlms+++ +rd+k+ r+ n+ +++ ++a+++rd m++ +rd+++++
orange1.1g022801m 1 MDDDALNMRNWGYYEPS--FKGHLGLQLMSTMPmvDRDTKPflpgRDPNI-MIGANGAFHPRDcvvseasipMNY-MRDSWISQ-------- 80
9***9999*******99..************9999***************.************************.9*******........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlse.pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
++k+l++l+ + + +vl++t+ ++slq+l+ p+++ + + p +e++ +++e + +kkrq + k +kakk+
orange1.1g022801m 81 RDKFLNMLPSNP--------TFGVLPETSGAHSLQMLQPpPNMSRDDRLaPDRVAPDRIVPKVEEPVVKTEGAPVKKRQGGGASKMPKAKKP 164
789*****9544........5899************666667654443313333444445556667788888888999999*********** PP
GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
kk +k+++ ++ +r+k kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
orange1.1g022801m 165 KK----PKDNNGTAV--QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRK 250
99....334444555..689************************************************************************ PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
orange1.1g022801m 251 MSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 292
*****************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MDDDALNMRN WGYYEPSFKG HLGLQLMSTM PMVDRDTKPF LPGRDPNIMI GANGAFHPRD 60
CVVSEASIPM NYMRDSWISQ RDKFLNMLPS NPTFGVLPET SGAHSLQMLQ PPPNMSRDDR 120
LAPDRVAPDR IVPKVEEPVV KTEGAPVKKR QGGGASKMPK AKKPKKPKDN NGTAVQRVKP 180
AKKSMDVVIN GIDMDISGIP IPVCSCTGAP QQCYRWGCGG WQSACCTTNV SMYPLPMSTK 240
RRGARIAGRK MSQGAFKKVL EKLAAEGYNF ANPIDLRTHW ARHGTNKFVT IR*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
