PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022289m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 300aa    MW: 34365.7 Da    PI: 7.2106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022289mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.43.2e-15225250126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ +++tG C+yGd C+FaH+
  orange1.1g022289m 225 WKTELCNKWQETGSCPYGDYCQFAHD 250
                        8************************7 PP
2zf-CCCH24.16.4e-08263288126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykte Cr  + +G+C+yG rC+F H+
  orange1.1g022289m 263 YKTEVCRMVLSGGICPYGHRCHFRHS 288
                        9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-18219257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-11221256IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8224251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99224252IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-12225250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-9258293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-14258291IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864262290IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6263288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEKEIRDESS PSDAKTSMTT ATATTSSSLT SDFDFDFDFD FDVDFSSIYN SVFPPRSSLS  60
PSLITDDRHR MATEHRLQQA RLILEYQQLC DHYDLCFSRL QAITRELETL RQQNADLRLA  120
NARLLKIITG SFHRMTEDIP PAFAPNNVME PNRLEKRTVL ERESFPKSIS VRSSGCTIKP  180
KQANASSGTS RPRAQRVYVP PGNNKREEAE EAKAVELEVY NQGMWKTELC NKWQETGSCP  240
YGDYCQFAHD FTELRPVIRH PKYKTEVCRM VLSGGICPYG HRCHFRHSLT EQERIPVPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22225291470Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386996.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N33e-77C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2H5NUP10.0A0A2H5NUP1_CITUN; Uncharacterized protein
STRINGXP_006482396.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-65C3H family protein