PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g022117m | ||||||||
Common Name | CISIN_1g022072mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 303aa MW: 33262.7 Da PI: 6.5089 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.1 | 4.1e-33 | 34 | 88 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl orange1.1g022117m 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-31 | 31 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.769 | 31 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-16 | 34 | 90 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-24 | 34 | 89 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-7 | 36 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.7E-16 | 128 | 172 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MIQREEIISR TSYHYHQNHG GGIEPCVVMT SDPKPRLRWT ADLHDRFVDA VTQLGGPSKA 60 TPKAIMRTMN VKGLTLFHLK SHLQKYRLGK QSGREMGDSP KDASYLIESS ANDNSLPNFP 120 ASDMNDYEVK EALRVQMEVQ SKLHLQVEAE KHLQIRQNAQ QRYLAMLERA CKILTDQILG 180 GAVVDADSEK CKGLGTKMPR SYILDSLGFY TSQSVEVAEV QCPEELLPNL HPQRADCSTE 240 SCLTSHESSG GLTMEGSPVG GKNSILSLDT TTGSLIWGEV KMGAQEISLA RENPSGISGY 300 GI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-18 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-18 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-18 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-18 | 34 | 90 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.16927 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467240.1 | 0.0 | protein PHR1-LIKE 3-like | ||||
Swissprot | Q8LAJ7 | 3e-61 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A067GT66 | 0.0 | A0A067GT66_CITSI; Uncharacterized protein | ||||
STRING | XP_006467240.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-63 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g022117m |
Publications ? help Back to Top | |||
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