PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021882m
Common NameCISIN_1g019011mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 307aa    MW: 34032 Da    PI: 8.8263
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021882mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.11.5e-31259854128
                NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  orange1.1g021882m  25 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 98 
                        689**********************************9999.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.1661121IPR003441NAC domain
SuperFamilySSF1019412.35E-4220121IPR003441NAC domain
PfamPF023655.9E-152898IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKISSTDFFE IWDCCGVVAG KAIFGEKEWY FFSPRDRKYP NGSRPNRVAG SGYWKATGTD  60
KIITTEGRKV GIKKALVFYV GKAPKGTKTN WIMHEYRLFE PSRKNGSSKL DDWVLCRIYK  120
KHSGSQKPVS ATSVSSSKEH SNGSCSSSSS HLDDVLESLP EIDDRFFALP RMNSLKTLQQ  180
EDNKVNNLQH LGSGNFDWAS LAGLHSVPEF VSAAQTQTTT QSHGVACYAN NDFYVPSMPQ  240
MCHVNSGRVG NSVEEEVQSG LRNQRVDNSG LFQHNSAVLT QPNFCSLVDP YGLRHPTQSS  300
GFGFRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-69912757171NO APICAL MERISTEM PROTEIN
1ut4_B4e-69912757171NO APICAL MERISTEM PROTEIN
1ut7_A4e-69912757171NO APICAL MERISTEM PROTEIN
1ut7_B4e-69912757171NO APICAL MERISTEM PROTEIN
3swm_A4e-69312752174NAC domain-containing protein 19
3swm_B4e-69312752174NAC domain-containing protein 19
3swm_C4e-69312752174NAC domain-containing protein 19
3swm_D4e-69312752174NAC domain-containing protein 19
3swp_A4e-69312752174NAC domain-containing protein 19
3swp_B4e-69312752174NAC domain-containing protein 19
3swp_C4e-69312752174NAC domain-containing protein 19
3swp_D4e-69312752174NAC domain-containing protein 19
4dul_A4e-69912757171NAC domain-containing protein 19
4dul_B4e-69912757171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.46230.0flower| fruit| leaf| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464708.10.0NAC domain-containing protein 72
SwissprotA0A3Q7HH641e-109JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A067GFM50.0A0A067GFM5_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q4J40.0A0A2H5Q4J4_CITUN; Uncharacterized protein
STRINGXP_006464708.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-88NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]