PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021098m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 318aa MW: 35605.4 Da PI: 9.4757 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.7 | 7.9e-16 | 248 | 298 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+ + +el+k+ orange1.1g021098m 248 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLR-KQKELEKMF 298 79****************************************.668888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-14 | 239 | 296 | No hit | No description |
SMART | SM00338 | 5.6E-13 | 244 | 311 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.76 | 246 | 291 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.8E-13 | 248 | 297 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.81E-11 | 248 | 293 | No hit | No description |
CDD | cd14707 | 6.26E-24 | 248 | 297 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 251 | 266 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MLMRGMQMMG SQADGSSNGK QSQFQPLARQ NSMYSLTLDE VQNQLGDLGK PLSSMNLDEL 60 LKNVWTAEVE MEGTTLAEQT SLQRQASLSL TSALSKKTVD EVWRDIQQSK SSGEKKPRDR 120 QATLGEMTLE DFLVKAGVVA EASSDKKIDG PVVGVDQNVV PHFPQQGPWM PYPHPQYQHS 180 QQSMMGVYMP GQPIPQPMNM VTGAVMDVSF PENQVGLTSP SMGTLSDPQL LGRKRGASED 240 MIEKTVERRQ KRMIKNRESA ARSRARKQAY TNELENKVSR LEEENERLRK QKELEKMFSA 300 PPPQPKYQLR RTSSSPF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432530.2 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Refseq | XP_006471287.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Refseq | XP_024039912.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9LES3 | 1e-92 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A2H5PCD1 | 0.0 | A0A2H5PCD1_CITUN; Uncharacterized protein | ||||
STRING | XP_006471287.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1884 | 28 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 6e-83 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021098m |
Publications ? help Back to Top | |||
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