PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g020697m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bZIP

Protein Properties

Length: 323aa MW: 36026.2 Da PI: 6.8987

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g020697m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.1	5.3e-15	253	295	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a+++eLe+kv Le+eN++L+ orange1.1g020697m 253 RRQKRMIKNRESAARSRARKQAYTQELENKVSRLEEENERLRR 295 79***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.4E-15	246	298	No hit	No description
SMART	SM00338	8.2E-14	249	316	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.886	251	300	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.91E-23	253	299	No hit	No description
Pfam	PF00170	1.8E-12	253	295	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-11	253	298	No hit	No description
PROSITE pattern	PS00036	0	256	271	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGTQTMGSEG DAAAQAKNML SLTRQGSLYN LTLDEIQSQL GDRGKPLGSM NLDELLKSVW 60 TAENNFHSEP ALSLHRQGSL TLAQDLSNKT VDEVWKDIRQ KKSDDNQENE AQARQTSLGE 120 MTLEDFLIKA GAVNESTTPG QNNSGPGLEV DSIATVQQNV SQHAQWMQYQ LPSVQLQPQH 180 QHQHQNNLMA VYMPTHTIQQ SLPITANPVL DAQYPDNQMT MSPSSLMGAL SDTQTPGRKR 240 VASGDVVEKT VERRQKRMIK NRESAARSRA RKQAYTQELE NKVSRLEEEN ERLRRQRAEV 300 ILPCAPPPEP KYQLRRTGSA PF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024955672.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_024955673.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-104	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2H5MZJ2	0.0	A0A2H5MZJ2_CITUN; Uncharacterized protein
STRING	XP_006430421.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-92	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	orange1.1g020697m

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]