 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g019954m |
| Common Name | CISIN_1g019954mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 334aa MW: 37737.7 Da PI: 4.5319 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g019954m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.9 | 2e-19 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k
orange1.1g019954m 96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149
56689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.3 | 3.1e-41 | 95 | 186 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+
orange1.1g019954m 95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 186
69**************************************************************************************9985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MAGGRMYNQN SSSGGGTSSL SFLIQSQKGS CSNSQNLDAS FLSGPSPSPF LGPRSMVSFE 60
DVHLANGSNN RPFFRPFDRD ENGDEDFDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP 120
ERKIQLAKDL GLQPRQVAIW FQNRRARWKT KQLEKDYDVL QNSYNSLKAD YDNLFKEKEK 180
LKAEVLKLTD KLQVKEKESK NTELPVVNKQ EPPQISEPVA DSAASEGKVC KASVVACKQE 240
DISSAKSDIF DSDSPNYTDG VHSSLLETCD SSYVFEPEQS DLSQDEDDSL SKNVLLPPYV 300
FPKLEETEYS DPPTNSCNFG FPIEDHAFWS WSF*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 143 | 151 | RRARWKTKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KR492082 | 0.0 | KR492082.1 UNVERIFIED: Citrus sinensis clone 170-1k mRNA sequence. |
| GenBank | KR492150 | 0.0 | KR492150.1 UNVERIFIED: Citrus maxima clone 170-1 mRNA sequence. |
