![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g019686m | ||||||||
Common Name | CISIN_1g015940mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 338aa MW: 37767.6 Da PI: 7.6265 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.8 | 6.3e-28 | 81 | 162 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk+k+++++ s +++y+++++ orange1.1g019686m 81 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS---GSAKMSYYKEID 162 ********************************************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-5 | 72 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.502 | 73 | 137 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.3E-5 | 77 | 139 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.42E-5 | 78 | 148 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 5.16E-29 | 79 | 144 | No hit | No description |
Pfam | PF13837 | 7.3E-22 | 80 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MYLSEKPRPY LTEKPRPIDY YKDEAVAAAA AAAAAASSRD MIMEVAAASN GELQPQQMIL 60 ADSSGGEDHE VRAPKKRAET WVQDETRILI AFRREMDGLF NTSKSNKHLW EQISAKMREK 120 GFDRSPTMCT DKWRNLLKEF KKTKHQDRGS GSAKMSYYKE IDEILKERSK NAQYKATSVA 180 NSANKVDTFM QFSDKGFDDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTADAVAAAG 240 VPPWNWRDPP PGNGGEGQSF GGKVISVKCG DYTRRIGIDG TPDAIKEAIK SAFGIRTKRA 300 FWLEDEDQIV RCIDRDMPVG NYTLHLDEGK LLHMWFL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-51 | 75 | 160 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.5906 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00141 | DAP | Transfer from AT1G13450 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438124.1 | 0.0 | trihelix transcription factor GT-1 isoform X2 | ||||
Refseq | XP_006484031.1 | 0.0 | trihelix transcription factor GT-1-like isoform X2 | ||||
Swissprot | Q9FX53 | 1e-164 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A067GQN0 | 0.0 | A0A067GQN0_CITSI; Uncharacterized protein | ||||
STRING | XP_006438124.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-156 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g019686m |
Publications ? help Back to Top | |||
---|---|---|---|
|