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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g019627m |
Common Name | CISIN_1g019627mg, LOC102619881 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
C3H |
Protein Properties |
Length: 339aa MW: 37824.3 Da PI: 7.611 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g019627m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 25.3 | 2.7e-08 | 91 | 116 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC f G C+ G++C+FaHg+
orange1.1g019627m 91 FKTRLCAKFKH-GACRNGENCNFAHGM 116
69*******99.*************95 PP
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2 | zf-CCCH | 29.7 | 1.1e-09 | 154 | 177 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k++lC+ f+ + +C+yGdrC+F H
orange1.1g019627m 154 KMKLCKKFYNGEECPYGDRCNFLH 177
789*******66************ PP
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3 | zf-CCCH | 36.4 | 8.5e-12 | 230 | 255 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC + + G+C++G++C+FaHg+
orange1.1g019627m 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQ 255
8**********.*************97 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-14 | 86 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-8 | 88 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-5 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-6 | 91 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 152 | 180 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-7 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-9 | 154 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-7 | 154 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-16 | 225 | 259 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-9 | 226 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 229 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.751 | 229 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 230 | 255 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MSFPNSSSPF LAQELQSYSA GSDAIGVWPQ FSMSDEQQYD RLSQYDQQPP FKRPRNYEDN 60 ESNSATYPPM NPRMNPSMNL PINKGITNIF FKTRLCAKFK HGACRNGENC NFAHGMEDLR 120 QPPPNWQELV GGGRAEEDRS SGGNWDDDQK IIHKMKLCKK FYNGEECPYG DRCNFLHEDP 180 AKFRDDSGRY RESSAISIGT TGPPVVTGSC SNQAEGNRPV GSNCVKPVYW KTKLCIKWTQ 240 GQCPFGEKCH FAHGQSELQV IGGRTEGEAG NPSFISVKPQ LVPANDSSPT AVLPTLNKEG 300 QGKQCLFKWK GPKKINRIYA DWLDDMPLAH NLPSQVES*
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