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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019151m | ||||||||
Common Name | CISIN_1g019151mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 346aa MW: 39282.7 Da PI: 5.7457 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.1 | 2.6e-07 | 284 | 315 | 23 | 54 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + orange1.1g019151m 284 PYPTEEDKARLVQETGLQLKQINNWFINQRKR 315 8*****************************87 PP | |||||||
2 | ELK | 29.2 | 2.1e-10 | 236 | 257 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ orange1.1g019151m 236 ELKHELKQGYKEKIVDIREEIL 257 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.8E-16 | 71 | 115 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.6E-17 | 73 | 112 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.7E-25 | 124 | 179 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.4E-19 | 129 | 178 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 236 | 256 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.7E-7 | 236 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.321 | 256 | 319 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 258 | 322 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.4E-10 | 258 | 323 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.18E-10 | 259 | 318 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 263 | 320 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 276 | 315 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAYNDQQNMQ RLVLPTTSTN PPPPTWLNNA VRHHHHQNND DDDDDEEEAP KNNKNNSASN 60 DNGRAEDWET VKCKAEIVGH PLYEQLLSAH VSCLRIATPV DQLPKIDAQL SRSRDVLAKY 120 SAVANGRVLD DKELDQFMTH YVLLLYSFKE QLQQHVRVHA MEAVMACWDL EQSLQSLTGV 180 SPGESTGATM SDDDEDQVDS DTNFFDGSLD GPDSMGFGPL VPTESERSLM ERVRHELKHE 240 LKQGYKEKIV DIREEILRKR RAGKLPGDTT SLLKAWWLSH AKWPYPTEED KARLVQETGL 300 QLKQINNWFI NQRKRNWHAN PSSSTASKSK RKSWTEVLAS SPNFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 259 | 324 | 8 | 73 | Homeobox protein PKNOX1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7051 | 0.0 | flower| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453704.1 | 0.0 | homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | P48000 | 1e-162 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A067F776 | 0.0 | A0A067F776_CITSI; Uncharacterized protein | ||||
STRING | XP_006453706.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-150 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019151m |
Publications ? help Back to Top | |||
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