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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g018990m |
Common Name | CISIN_1g018990mg, LOC102622941 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
AP2 |
Protein Properties |
Length: 349aa MW: 39178.9 Da PI: 8.8663 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g018990m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 51.1 | 3.3e-16 | 43 | 103 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56
s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+a++ a++k++g+
orange1.1g018990m 43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDNEEAAARAYDLAALKYWGH 103
57*******************999955656446*************************997 PP
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2 | AP2 | 53.1 | 7.8e-17 | 145 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a+++a+ +++g
orange1.1g018990m 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAQAYDRAAIEYRG 196
89****99**********99966...3.6*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009651 | Biological Process | response to salt stress |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0040008 | Biological Process | regulation of growth |
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process |
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MAKTSRQSQK NTTTNPNNNN TVTTKTKRTR KSVPRDSPPQ RSSIYRGVTR HRWTGRYEAH 60 LWDKNCWNES QNKKGRQVYL GAYDNEEAAA RAYDLAALKY WGHDTILNFP LSNYEEELVE 120 MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ 180 EEAAQAYDRA AIEYRGLNAV TNFDLSKYIK WLRPNNNQNN PKPSNPQQNP NSDDTSPIPK 240 LNQETSSGSE TSAPPPRSGA TAGGSGSASS ALGLLLQSSK YKEMVEKTST DCLSTSSEPG 300 SSHRIFPDDI QTMFFDCQDS SSYTEGDDVL LGDLNPYIFP TFYSELDN*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |