 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
orange1.1g018950m |
| Common Name | CISIN_1g018950mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
NAC |
| Protein Properties |
Length: 349aa MW: 39363.1 Da PI: 6.6749 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g018950m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 182.9 | 8e-57 | 12 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+
orange1.1g018950m 12 LPPGFRFHPTDEELITHYLTPKVFDGCFSA-RAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEI 102
79*************************999.89***************99999*************************************** PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
++ ++lvg+kktLvfykgrapkg+kt+Wvmheyrle
orange1.1g018950m 103 YK-AKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLE 138
**.999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MEKYDDQEQI ELPPGFRFHP TDEELITHYL TPKVFDGCFS ARAIGEVDLN KCEPWDLPRR 60
AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKAKALVG MKKTLVFYKG 120
RAPKGQKTNW VMHEYRLEGK YSAYDHPKTA KNEWVICRVF QKSGGGKKTH IQGMVKLGSF 180
GNGIGSSALP PLMDSSPYNS ETRTTINETS HVTCFSDALE DQKAQEDMID SFNNSLLASS 240
SSSNPHSEIS PASIFFSKSS FSNSLYADQI LPRIANMQYP DSFLMQDQSI LKMLLENHGP 300
STKKNSKAEF SQDESVVSNH EFIQGSFDDH EDPSSSAGPV ALDCLWNY*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-55 | 1 | 168 | 6 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-55 | 1 | 168 | 6 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ619349 | 0.0 | FJ619349.1 Poncirus trifoliata NAC domain protein mRNA, complete cds. |
