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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g018835m |
| Common Name | CISIN_1g018835mg, LOC102616041 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 351aa MW: 39627.9 Da PI: 5.8459 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g018835m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.8 | 1e-53 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelv +yLk+kv+g ++el evi+ v++yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd+
orange1.1g018835m 6 LPPGFRFHPTDEELVGYYLKRKVDGLQIEL-EVIPVVELYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDR 96
79****************************.99**************95344555788********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v++++++++g +ktLvfy+grap g +tdWvmheyrl
orange1.1g018835m 97 KVVCQSTSATGYRKTLVFYRGRAPLGDRTDWVMHEYRL 134
************************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008283 | Biological Process | cell proliferation |
| GO:0071365 | Biological Process | cellular response to auxin stimulus |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MGGASLPPGF RFHPTDEELV GYYLKRKVDG LQIELEVIPV VELYKFDPWE LPEKSFLPKR 60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSTSATGYRK TLVFYRGRAP 120
LGDRTDWVMH EYRLCDDVSH GSPNFWGAFA LCRVVKKNEN AQKTSPPSYG EPKGKRVGSS 180
SSIVDLTSSK ACNGPLSISS DISSQASYLY NESRYSSPIT SPYPYEVSTV PESEHAPMET 240
NPANLWVSPD LILDSSKDYP QTHEAVSEYN PNYEFQNSVT PCHPFEHKDF SPGSSYSNFN 300
GEIELAEDLS RFGCMSPYSI HANYTGFYGN EDMPYQGYDH SNSPDYSSLF *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-52 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-52 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-52 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-52 | 5 | 163 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-52 | 5 | 163 | 19 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-52 | 5 | 163 | 16 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-52 | 5 | 163 | 16 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
